PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016170-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 387aa    MW: 42409.2 Da    PI: 8.7465
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016170-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.5e-411390178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                      +Cq+egC+adl++ak+yhrrhkvCe+hska++v++ g++qrfCqqCsrfh l efDe krsCr+rLa+hn+rrrk+q+
  PSME_00016170-RA 13 RCQAEGCKADLTNAKHYHRRHKVCEFHSKATSVVTGGVQQRFCQQCSRFHLLAEFDEVKRSCRKRLADHNRRRRKPQT 90
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.8E-35875IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.7011188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-391293IPR004333Transcription factor, SBP-box
PfamPF031104.0E-311487IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPLAIPPASQ VPRCQAEGCK ADLTNAKHYH RRHKVCEFHS KATSVVTGGV QQRFCQQCSR  60
FHLLAEFDEV KRSCRKRLAD HNRRRRKPQT NTIVPAVSSV EAATALKVED DDNNVSGSCN  120
NTSRGTVQTS VAAAASPVLR TEAQALLNAM SFPLILQNTK GSQMNNNTNS NSNTTTTNNP  180
MLQQPNSQKV PVANQQYVQQ QNGGGHKGPN LSLSSPSVGM SLCNQRQTTA QDYSGLELAL  240
PWLRTTSDYG GSSHRPPPAM DNILHPIISH EKANVEAFSA SSVKNFLPLT RSMSSRELVS  300
SQWMVGSSDS ASSLEAGQQM FSLLEPAEHH NRTEEQAQTA RPVEYLSHRH QGGLNSKEPV  360
DGNPEVKFFD MQNSLRPFGQ SIYDGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3014871184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17087KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0607563e-71FJ060756.1 Pinus taeda isolate 5687 anonymous locus 0_16866_02 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-43squamosa promoter binding protein-like 8