PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016379-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 192aa    MW: 22135.5 Da    PI: 9.6954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016379-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.8e-1137765291
               NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
                       +++ +w+fF++ d+ky++g+r+nra++++yWkatg    
  PSME_00016379-RA 37 PSKDLQWHFFCPYDRKYPNGSRTNRAIEASYWKATGFFCL 76
                      456779*****************************97544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-103772IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKDCSNIIFL KQVIILQVSL IFSYLLYPKV SDKICIPSKD LQWHFFCPYD RKYPNGSRTN  60
RAIEASYWKA TGFFCLMPRR QEKRIRNKKF SKPETPSATF NDMTKDSNAI ERWLDVLLDD  120
LDQNVSLTSP VESKNNTKSM LDSMTKRGKK KSKIVDYDSN EKFFGVAPIP RIAIIDEDTK  180
AVTGVDPEFK SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-16NAC domain containing protein 28