PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016385-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 241aa    MW: 26434.9 Da    PI: 4.681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016385-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-172474155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++kG+r +k +g+Wv+eIr p++   r + +lg++ tae+Aa+a++aa  +l+g
  PSME_00016385-RA 24 SQFKGIRKRK-WGSWVSEIRMPRS---REKLWLGSYTTAEQAARAYDAAVCCLRG 74
                      789****999.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-252483No hitNo description
SuperFamilySSF541712.16E-182484IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-282584IPR001471AP2/ERF domain
PfamPF008471.1E-92574IPR001471AP2/ERF domain
SMARTSM003808.8E-312588IPR001471AP2/ERF domain
PROSITE profilePS5103221.0612582IPR001471AP2/ERF domain
PRINTSPR003671.2E-72637IPR001471AP2/ERF domain
PRINTSPR003671.2E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAKIPRAEHA QALAEEDPAA LKSSQFKGIR KRKWGSWVSE IRMPRSREKL WLGSYTTAEQ  60
AARAYDAAVC CLRGPNATFN FPNSAPSIPS ASSLSRHQIK LAAARYATLD QLPSISASAH  120
NNNNNENGNA NNDNDNNKAR DDSASPSQSA LVQETVSLMN GQHHQQEDEL ALWESLFAGP  180
DDCPAKNSES LPSTDEASAL KLIPFPSPSW AEQRHEQPEA DEEGDMNSFL DVTDLWNFGD  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1324831373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ91e-56D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-31ERF family protein