PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00016506-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 24373 Da PI: 5.8381

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00016506-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.1	3.5e-26	9	59	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50 krien + r+vtfskRrng+lKKA+ELSvLCdaev ++ifs++gk lye++ PSME_00016506-RA 9 KRIENAMSRKVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGKvLYEFA 59 79******************************************9569997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-33	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-24	1	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.731	1	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-23	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.84E-34	3	72	No hit	No description
Pfam	PF00319	7.9E-24	10	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVRGKNLMKR IENAMSRKVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGKVLYEFAN 60 PRALAYDYLQ FSPSYPFVSK IRAWFALLLV DAQDGIMDVF GIEVDFCDAA NSDNEVIKRP 120 SITPSSSKRS GLFTMFLGEP AESQWKNTEY LNVAGSLGPL ASMHAVGPCF SACESMIEGP 180 DGPELCISFT FFTPVYTIDQ MHSFSTSTLE LLSSEYSKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ086087	1e-109	FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-28	AGAMOUS-like 20