PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00016605-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 296aa MW: 34055.7 Da PI: 4.5138

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00016605-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	196.6	8.9e-61	163	294	41	184
VOZ 41 eglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdys 133 +g+pg+ p+l p+gid+kdgllfa l ak+ gk+ gi ece elfdl +l+ge irew+ fdkp+raf+sgnrk+rsl dy+ PSME_00016605-RA 163 QGPPGMGPILLPRGIDVKDGLLFAILGAKTMGKDFGILECE------------ELFDLFVLQGEVIREWIIFDKPQRAFKSGNRKKRSLQDYN 243 79************************************8............9*********************************** PP VOZ 134 grgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyr 184 grgw esrkq mke+gg krsy mdp ps++fewh+yeye+n++d++alyr PSME_00016605-RA 244 GRGWNESRKQAMKELGGIKRSYCMDPPPSNQFEWHIYEYEMNNCDSCALYR 294 ************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDWRSYWVAE FASSGETYGL GIFTDLQQAR KEIKVNDALV LEEQVHQLLR EWKAELHEAS 60 PTTSMMEVSL CSSYLSCDMW CLLQLHEEED DATSVLVAPY ISKLQLNENS LEAVNPSSFQ 120 EVIPPNEMRK GLEAAARLNW DFDHNLCLSL DPEVEEEHIP KFQGPPGMGP ILLPRGIDVK 180 DGLLFAILGA KTMGKDFGIL ECEELFDLFV LQGEVIREWI IFDKPQRAFK SGNRKKRSLQ 240 DYNGRGWNES RKQAMKELGG IKRSYCMDPP PSNQFEWHIY EYEMNNCDSC ALYRWS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008383671.1	2e-86	transcription factor VOZ1
Refseq	XP_008383672.1	2e-86	transcription factor VOZ1
Swissprot	Q9SGQ0	5e-59	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2N9ELG3	7e-84	A0A2N9ELG3_FAGSY; Uncharacterized protein
STRING	XP_008383671.1	8e-86	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-61	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]