PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016606-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 491aa    MW: 54008.4 Da    PI: 8.9104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016606-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29157215259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ ++++ prsYY+C +a gCpvkk+v+r+a+dp++v++tYegeH+h+
  PSME_00016606-RA 157 NDGCHWRKYGQKNTRNNTRPRSYYKCGMApGCPVKKQVQRCAQDPTIVITTYEGEHTHP 215
                       8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31143215IPR003657WRKY domain
SuperFamilySSF1182901.83E-26148216IPR003657WRKY domain
PROSITE profilePS5081126.544151217IPR003657WRKY domain
SMARTSM007741.8E-33156216IPR003657WRKY domain
PfamPF031064.6E-25157215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTVLVDKINL VKEENMKLSF TLKRMISKYN DLRKHIRFLA QKRGVDGSQV FNPDRSGQEL  60
LYARYSSGAV SHQSDMCGDC HKRGREKEKS TRLIGDQQLQ SKKTKIENGS TSSPCCDEKS  120
SKKQQHQVPR GGSRDQTAAA PKRTVSVQTR SETSVINDGC HWRKYGQKNT RNNTRPRSYY  180
KCGMAPGCPV KKQVQRCAQD PTIVITTYEG EHTHPLSPLA MSVMNGLESP TLMDRWRITA  240
LGKPVLSLPI NGPSENPSSI DLKECMAAGL ERETVFCSSL GSSFFNTLQV HRRLNSVSGC  300
QNGSRNGLES PTLMDRWRIT ALGKPVLSLP INGPSENPSS IDLKECMATG LERETVFCSS  360
LGLSFFNTLQ VHRRLDLVSG CQDGSRITTS GLCPTITLDL TDNCPNPGLQ LQPAHLEAGS  420
FQQTPLSNDL GQVLDHDQNQ LDNYSSIMQE SMASILKGDP NFTAALTVAI AGSLFNLGAP  480
FLGMPKSPRI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-21147216876Probable WRKY transcription factor 4
2lex_A7e-21147216876Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1104113e-50BT110411.1 Picea glauca clone GQ03221_F16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK93e-62A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-33WRKY family protein