PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016852-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 279aa    MW: 31870.4 Da    PI: 9.7071
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016852-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.53.7e-32711622102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ + e+a +vLp+yF hsnf+SFvRQLn+YgF+kv + +          eF +  Fkk++k+ll
  PSME_00016852-RA  71 FLVKTYRLVDDPSTDHIVSWGKHNNTFVVWRPIELAASVLPRYFNHSNFSSFVRQLNTYGFRKVVRGR---------CEFGNGLFKKDQKHLL 154
                       9***************************************************************9988.........67************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00016852-RA 155 SHIQRRKP 162
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-4967160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-3569160IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3169160IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-197194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2871160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-19122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTDPPAPQTE PCLARHRQRN PMGRRNPQWA QKDSEQKNLR TPIESDILKA LMGEGTGGVV  60
RDEGRLVASP FLVKTYRLVD DPSTDHIVSW GKHNNTFVVW RPIELAASVL PRYFNHSNFS  120
SFVRQLNTYG FRKVVRGRCE FGNGLFKKDQ KHLLSHIQRR KPSISSQTME LAGQMEYDQS  180
LNPNSSSAVQ DSDVPAAAPC LFEEHEILKR NNLLLLSEID RLQNICVRDF KLFIRHNTRD  240
PPLIDMHRKI DKVSSNVSMT DVSEEISMSP PKLFGVPLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-217116520125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9WUJ34e-65H9WUJ3_PINTA; Uncharacterized protein (Fragment)
STRINGSolyc11g064990.1.11e-46(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-44heat shock transcription factor B4