PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016871-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family BES1
Protein Properties Length: 186aa    MW: 20846.2 Da    PI: 10.1886
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016871-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822132.64.4e-4190177693
            DUF822   6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                       ++++kE+E++k+RER+RRai+++i++GLR++Gny lp+raD+n+V++AL+reAGw+v+ DGttyr + + +   ++a  s++    s+
  PSME_00016871-RA  90 REREKEKERTKLRERQRRAITSRILSGLRQYGNYTLPARADINDVIAALAREAGWTVDSDGTTYRSQAHTPYPVKVAALSSTSLAGSP 177
                       6899*************************************************************65555534444444444333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3990183IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
TRRRRSFHTS YILRLQEIGS CDGISLFRGP SMDMVDQAHT VMSTSAIKRD EDDQELLNQQ  60
REQEQEEQGQ GNVQQVLVPA GNATVKRRIR EREKEKERTK LRERQRRAIT SRILSGLRQY  120
GNYTLPARAD INDVIAALAR EAGWTVDSDG TTYRSQAHTP YPVKVAALSS TSLAGSPGSS  180
ASLRST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-11108170391452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-11108170391452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-11108170391452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-11108170391452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167490.0BT116749.1 Picea glauca clone GQ03805_P11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220223.12e-30beta-amylase 7
RefseqXP_008232902.12e-30PREDICTED: beta-amylase 7
RefseqXP_021800260.12e-30beta-amylase 7-like isoform X1
TrEMBLM5X5T95e-29M5X5T9_PRUPE; Beta-amylase
TrEMBLM5X7F84e-29M5X7F8_PRUPE; Beta-amylase
STRINGXP_008232902.18e-30(Prunus mume)
STRINGEMJ214228e-30(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.11e-22beta-amylase 2