PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016904-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 177aa    MW: 19622 Da    PI: 5.9788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016904-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p+    +  r++lg+++t+e+Aa+a++ a+ +l+g
  PSME_00016904-RA 23 QFKGIRKRK-WGKWVSEIRMPN----StGRIWLGSYDTPEKAARAYDFAAFCLRG 72
                      69****999.**********93....259************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-292280IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-202381IPR016177DNA-binding domain
CDDcd000181.23E-292380No hitNo description
SMARTSM003801.3E-322386IPR001471AP2/ERF domain
PROSITE profilePS5103222.1942380IPR001471AP2/ERF domain
PfamPF008474.3E-112472IPR001471AP2/ERF domain
PRINTSPR003677.3E-92435IPR001471AP2/ERF domain
PRINTSPR003677.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAKPSTDQTA NNNPENRSLK SRQFKGIRKR KWGKWVSEIR MPNSTGRIWL GSYDTPEKAA  60
RAYDFAAFCL RGSKAKLNFP LFLPEIPCTS SLSPTQIQAA AAKFAAEKFQ LPSEDDATFS  120
SSGSEADCGS DGQEIWAEKD PAFWDSVLLQ SLESGKSPNL NGLPLLDESM EYYGVHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-182081264ATERF1
3gcc_A7e-182081264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238500.11e-37dehydration-responsive element binding protein 3
RefseqXP_028209816.11e-37ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5913e-34ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9NQM11e-89A9NQM1_PICSI; Uncharacterized protein
STRINGGLYMA17G05240.15e-37(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.16e-33ERF family protein