PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016905-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 177aa    MW: 19697.2 Da    PI: 7.1324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016905-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-162472355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +kG+r +k +g+Wv+ Ir p++   + r++lg+++t e+Aa+a++ a+ +l+g
  PSME_00016905-RA 24 FKGIRKRK-WGKWVSDIRMPNS---KGRIWLGSYDTLEKAARAYDFAAFCLRG 72
                      8****999.**********832...49************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.7992380IPR001471AP2/ERF domain
CDDcd000187.08E-292380No hitNo description
Gene3DG3DSA:3.30.730.102.3E-282380IPR001471AP2/ERF domain
SMARTSM003804.1E-312386IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-202381IPR016177DNA-binding domain
PRINTSPR003672.0E-112435IPR001471AP2/ERF domain
PfamPF008476.2E-102472IPR001471AP2/ERF domain
PRINTSPR003672.0E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAKPSTDQTA NNNPENCSVK SWQFKGIRKR KWGKWVSDIR MPNSKGRIWL GSYDTLEKAA  60
RAYDFAAFCL RGSKAKLNFP LFLPEIPCTS SLSPPQIQAA AAKFAAEKFQ LPSKDDATFS  120
SSGSEADCGS DGQEIWAEKD PTFWDSILLQ ILESGKSPNL NGFPPLDESM EYYGVHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161981164ATERF1
3gcc_A2e-161981164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261769.12e-37PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ9S7L51e-33ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA9NQM18e-84A9NQM1_PICSI; Uncharacterized protein
STRINGXP_010261769.17e-37(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]