PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016930-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 243aa    MW: 27270 Da    PI: 8.7698
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016930-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.95.9e-125882327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C +++rtG C yG++C+F+H+p
  PSME_00016930-RA 58 EPDCAYYMRTGLCGYGPNCRFNHPP 82
                      689********************97 PP
2zf-CCCH37.44.2e-12100124327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tG Ck+G++Ck++H++
  PSME_00016930-RA 100 QPECKYYLKTGACKFGATCKYHHPR 124
                       799********************96 PP
3zf-CCCH25.32.6e-08145170227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C +++rt  CkyG  CkF+H++
  PSME_00016930-RA 145 GEKECAYYMRTRCCKYGVHCKFHHPQ 170
                       6789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6955583IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-56181IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-697124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.34797125IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.4143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6143171IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6145170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEYYRQEENW AMHSNKNNVL TFTASTDMKS IEKSMGKMTL KSSVDPVESG SYPERVDEPD  60
CAYYMRTGLC GYGPNCRFNH PPNLKQAIAS KGEFPERVGQ PECKYYLKTG ACKFGATCKY  120
HHPRDRNGLG EQVQMNYLGL PMRQGEKECA YYMRTRCCKY GVHCKFHHPQ PSAIVPVSSY  180
ASSGSPTTPV SSYPPGLLSW PLPRPPYVPG SRLQGSPTYV PVIFSPPQGM IPISGWNNYQ  240
VSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252579.11e-80PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ9SWF94e-70ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D6R4111e-111A0A0D6R411_ARACU; Uncharacterized protein
STRINGXP_010252578.14e-80(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-65zinc finger protein 1