PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016931-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 291aa    MW: 30809.5 Da    PI: 7.9949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016931-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12132157227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+++++tG Ck+G +CkF+H++
  PSME_00016931-RA 132 GQPDCQYYMKTGDCKFGTTCKFHHPK 157
                       789*********************96 PP
2zf-CCCH36.58.3e-12177202126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C f++++G+Ck+G+ CkF H+
  PSME_00016931-RA 177 PGQPACTFYSQYGICKFGPACKFDHP 202
                       57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.103130158IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-6130157IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9131157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5136157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859176204IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7176203IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9178202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5180204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTSTIPCLLG MTRNVIDDAP ILERTKARTM SLEVTEDARV KVDSGSRLKN PYGTGGNAAK  60
SPLSPLLSPE SHQQPLGAGI AYKSFQQNDS SSSGVQSAVT PLVQVGSAAM GLPTVQAQPS  120
VEQKESFPER FGQPDCQYYM KTGDCKFGTT CKFHHPKERV AQSPTCVLSP IGLPLRPGQP  180
ACTFYSQYGI CKFGPACKFD HPLAGVSYSP SASSLSEQPV APYPRGSSPT RMLVRSSSSE  240
NSQAALTIKG QSSRLEESAS FKHHSTTDGP VGTNETDTSS NSVAAVLSES A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.12e-56zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.12e-56zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.12e-56zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373417.19e-57zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ84W912e-46C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D6R4112e-88A0A0D6R411_ARACU; Uncharacterized protein
STRINGPP1S102_155V6.16e-56(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.28e-49C3H family protein