PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017029-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 141aa    MW: 15945.2 Da    PI: 5.5086
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017029-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.81.4e-2720114599
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++   f++++ +kfa++h++FGa nv+kl+++lp ++r +a++s+vyeA ar+++P  G+ g+i+kl++q++ l+ ++ ++
  PSME_00017029-RA  20 CKMEQKECMDNCTILYGFASNDLHKFAILHQVFGACNVIKLIQELPSDQRVEAIDSMVYEASARLHEPALGCSGIIHKLERQISDLELQITST 112
                       **************************************************************************************9999887 PP

            DUF260  98 ke 99 
                       ++
  PSME_00017029-RA 113 RA 114
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.48515116IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-2620112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSITEEKPRM PSPSVAFHDC KMEQKECMDN CTILYGFASN DLHKFAILHQ VFGACNVIKL  60
IQELPSDQRV EAIDSMVYEA SARLHEPALG CSGIIHKLER QISDLELQIT STRARIQKIH  120
CQQAQLVAFL HGFNNTSEED D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2381233118LOB family transfactor Ramosa2.1
5ly0_B5e-2381233118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U34e-53A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-34LOB domain-containing protein 11