PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017033-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 115aa    MW: 13204.7 Da    PI: 4.2053
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017033-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.74.4e-1515546100
            DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       +k+lp e+r da++s+vyeA  r+rdPv+G+v+vi++lq+++++l+++l++++ee
  PSME_00017033-RA   1 MKDLPAEKRYDAVTSMVYEAGERVRDPVRGCVRVINDLQNKVSELESQLVYTQEE 55 
                       57899*********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.892156IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-13253IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MKDLPAEKRY DAVTSMVYEA GERVRDPVRG CVRVINDLQN KVSELESQLV YTQEEVARIT  60
QQNGNLITII TGYHEVSYPN FYIPSLQADH SEDTHTNPPV SDDIDPLELW EPLWT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI98e-37B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.16e-19LOB domain-containing protein 11