PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017162-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 144aa MW: 16213.8 Da PI: 5.6634

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017162-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	173.9	7.4e-54	34	144	1	111
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs w+qdyc +fh ++a neg++g+ pvlrp+gidlkd llfaalsak+ k gipecegaat+kspwna+ PSME_00017162-RA 34 PPPKAFLGPKCALWDCPRPAQGSYWCQDYCRNFHRMVAWNEGPLGMGPVLRPGGIDLKDVLLFAALSAKTVVKYFGIPECEGAATKKSPWNAP 126 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlf 111 elfdl +l+ e ir lf PSME_00017162-RA 127 ELFDLFVLQEEFIRVALF 144 ************8887 PP

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MNRYFDHNLC LSLDPEVEEE HIPKFQGPCP GISPPPKAFL GPKCALWDCP RPAQGSYWCQ 60 DYCRNFHRMV AWNEGPLGMG PVLRPGGIDL KDVLLFAALS AKTVVKYFGI PECEGAATKK 120 SPWNAPELFD LFVLQEEFIR VALF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	3e-56	PREDICTED: transcription factor VOZ1
Refseq	XP_019079230.1	3e-56	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-51	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2K3NRV0	5e-55	A0A2K3NRV0_TRIPR; Transcription factor VOZ1-like protein
TrEMBL	A5CA22	1e-54	A5CA22_VITVI; Uncharacterized protein
TrEMBL	F6H4X2	2e-54	F6H4X2_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	4e-55	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	5e-54	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]