PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017305-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 172aa MW: 18673.2 Da PI: 12.0052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017305-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.9e-07	144	169	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er RR+ri +++ L+el+P++ PSME_00017305-RA 144 HSIAERLRRERIAERMKALQELVPNS 169 99**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-7	137	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.553	139	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-6	140	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.65E-5	143	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MQLRQHPLSG NSSMNQTQTR FRKGSMKPIH LRLLASMGNS PRGTAVMTWS PSIGGSCNGS 60 DGGMLPLPLS LGQARKSGEM NETRSRDEIE ASFKSANNSG QVPMQGYGGM PQPQHQNPPP 120 TGVGAAPPVR PRARARRGQA TDPHSIAERL RRERIAERMK ALQELVPNSN KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115043	1e-101	BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929149.1	2e-26	uncharacterized protein LOC105050721 isoform X1
Refseq	XP_010929150.1	2e-26	uncharacterized protein LOC105050721 isoform X2
STRING	XP_010275766.1	3e-24	(Nelumbo nucifera)