PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017392-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 505aa MW: 56717.6 Da PI: 5.1174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017392-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	283	334	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + ++ + a+i A++++k+L+ PSME_00017392-RA 283 QRMTHIAVERNRRKQMNEHLTVLRSLMPVS---FIQRGDQASIIGGAIDFVKELE 334 79*************************9...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.18E-12	281	338	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.8E-13	281	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.958	282	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	282	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-9	283	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-9	288	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MDAISGAREA VSPMEPNDAK FIPEGEGKLK WIYSEMYKTS ASHEFETECA KMGRCRPSME 60 MLDSQAPLNS CAQEKGFSEM LNVFGDRQSN LALLHMLEAI GMNRDETASV PCSLNNGRQL 120 LVPVLEQQRS LGFQELLSFP ICDNDNKRES LSFDEFLHGG HGSEYDLHLT NCRRPEWPNY 180 NFMQREVQAF EPESCITHVS ESCTSLVKTE AKDLFSSLDV PEEGVSSSSR EPNSSNTVNS 240 SDNCNDKRLE NINGDPANTV IRERIRKRKR SKVCKNTEEV ESQRMTHIAV ERNRRKQMNE 300 HLTVLRSLMP VSFIQRGDQA SIIGGAIDFV KELEQLLQSL QAQAQVQKRR KQCELEGSQS 360 PESAATPFNC FFLSPQYTSY SSQQEESKYN MDNSNLDQHN ELTAASKSAI ADVEVTVIET 420 HASLKVLSLK RSGQLLKAIS ALENLDMTIL HLNITTIDLS VLYSFNVKIE EECQLTSANE 480 IATAVHQIFS IIHSSSTNPV RNQVS

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MDAISGAREA VSPMEPNDAK FIPEGEGKLK WIYSEMYKTS ASHEFETECA KMGRCRPSME  60
MLDSQAPLNS CAQEKGFSEM LNVFGDRQSN LALLHMLEAI GMNRDETASV PCSLNNGRQL  120
LVPVLEQQRS LGFQELLSFP ICDNDNKRES LSFDEFLHGG HGSEYDLHLT NCRRPEWPNY  180
NFMQREVQAF EPESCITHVS ESCTSLVKTE AKDLFSSLDV PEEGVSSSSR EPNSSNTVNS  240
SDNCNDKRLE NINGDPANTV IRERIRKRKR SKVCKNTEEV ESQRMTHIAV ERNRRKQMNE  300
HLTVLRSLMP VSFIQRGDQA SIIGGAIDFV KELEQLLQSL QAQAQVQKRR KQCELEGSQS  360
PESAATPFNC FFLSPQYTSY SSQQEESKYN MDNSNLDQHN ELTAASKSAI ADVEVTVIET  420
HASLKVLSLK RSGQLLKAIS ALENLDMTIL HLNITTIDLS VLYSFNVKIE EECQLTSANE  480
IATAVHQIFS IIHSSSTNPV RNQVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	294	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532221.1	1e-101	transcription factor bHLH94 isoform X2
Refseq	XP_020532222.1	1e-101	transcription factor bHLH94 isoform X3
Refseq	XP_020532223.1	1e-101	transcription factor bHLH94 isoform X4
Refseq	XP_020532224.1	1e-101	transcription factor bHLH94 isoform X5
TrEMBL	B8LLL6	1e-132	B8LLL6_PICSI; Uncharacterized protein
STRING	ERM96627	1e-100	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-51	bHLH family protein