PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017529-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 345aa MW: 38651.7 Da PI: 4.9975

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017529-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	400.5	3.7e-123	122	338	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+afl pkcalwdc+rpaqg++w+qdycs fh tla neg+p ++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00017529-RA 122 PPPTAFLVPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 214 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rew+ffdkpr fesgnrkqrs+pdysg gwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00017529-RA 215 ELFDMYVLEGESMREWIFFDKPRWDFESGNRKQRSFPDYSGHGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 307 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v ++k++kgkv d+l+dlq++lg+l+a PSME_00017529-RA 308 LKMVCSNKNTKGKVGGDPLVDLQHQLGKLSA 338 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGEKPKTCN VWNTVKPFVN GGASGMLATC VIQPVDMIME NPSLPWVSRI ANIEHQENNN 60 YVQTSEQLPP NLVEGLEVTS GLEGGQINFH QDYIPAAQPI FTLNGEEETS PVFNGPQPGL 120 CPPPTAFLVP KCALWDCSRP AQGTKWCQDY CSDFHMTLAS NEGAPRMRPV LRPGGIDLKD 180 GPLFAALSAK TQEKAVGIPE CEGAATAKSP WNAYELFDMY VLEGESMREW IFFDKPRWDF 240 ESGNRKQRSF PDYSGHGWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA 300 CALYRLELKM VCSNKNTKGK VGGDPLVDLQ HQLGKLSAEF SWVAK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGEKPKTCN VWNTVKPFVN GGASGMLATC VIQPVDMIME NPSLPWVSRI ANIEHQENNN  60
YVQTSEQLPP NLVEGLEVTS GLEGGQINFH QDYIPAAQPI FTLNGEEETS PVFNGPQPGL  120
CPPPTAFLVP KCALWDCSRP AQGTKWCQDY CSDFHMTLAS NEGAPRMRPV LRPGGIDLKD  180
GPLFAALSAK TQEKAVGIPE CEGAATAKSP WNAYELFDMY VLEGESMREW IFFDKPRWDF  240
ESGNRKQRSF PDYSGHGWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA  300
CALYRLELKM VCSNKNTKGK VGGDPLVDLQ HQLGKLSAEF SWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-131	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-119	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-130	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-131	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-122	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]