PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017541-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37783 Da    PI: 4.4973
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017541-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1949102356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t eq++ Le+ Fe + ++  e++ +LA++lgL+ rqV +WFqNrRa++k
  PSME_00017541-RA  49 KKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWK 102
                       66789************************************************9 PP
2HD-ZIP_I/II131.23.9e-4249139292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kkrrl+ eqv++LE+sFe e+kLepe+K +la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk++yd+lk++ e L++e+e++r+el+
  PSME_00017541-RA  49 KKRRLTVEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDTLKSDFEGLQQENENIRAELE 139
                       9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-1940106IPR009057Homeodomain-like
PROSITE profilePS5007117.76744104IPR001356Homeobox domain
SMARTSM003893.6E-1846108IPR001356Homeobox domain
PfamPF000461.6E-1649102IPR001356Homeobox domain
CDDcd000862.56E-1749105No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2050111IPR009057Homeodomain-like
PRINTSPR000311.0E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.0E-584100IPR000047Helix-turn-helix motif
PfamPF021835.5E-17104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
AFGKFRNNLA MNINDHTYNL SPMANSGNPE EQMDEEAVDE FMNYQPESKK RRLTVEQVRS  60
LERSFEIETK LEPEKKIQLA QELGLQPRQV AIWFQNRRAR WKTKQLERDY SVLKASYDTL  120
KSDFEGLQQE NENIRAELEG LKEKLEEADC SKEDNDSDMG TSTKITSSIE NSKKLAADVV  180
GEETDIDVKP FSDFTLLFKE KDMGSEKMDF KPFRLMLLNE KEGSFSPGSD CSANTRNGDK  240
NPPHQILSQI AQASSSMKYP SGTNNIAAMD SINDQGLMHL AEALCGMGVP SKAYQQLFRI  300
DEGYLHEDAC NHFASEEDQG AASTLPWWEY WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1369701e-97FJ136970.1 Pinus taeda isolate 7088 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369711e-97FJ136971.1 Pinus taeda isolate 7103 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369721e-97FJ136972.1 Pinus taeda isolate 7099 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369731e-97FJ136973.1 Pinus taeda isolate 7087 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369741e-97FJ136974.1 Pinus taeda isolate 7101 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369751e-97FJ136975.1 Pinus taeda isolate 7086 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369761e-97FJ136976.1 Pinus taeda isolate 7093 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369771e-97FJ136977.1 Pinus taeda isolate 7095 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369781e-97FJ136978.1 Pinus taeda isolate 7096 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369791e-97FJ136979.1 Pinus taeda isolate 7089 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369801e-97FJ136980.1 Pinus taeda isolate 7090 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369811e-97FJ136981.1 Pinus taeda isolate 7091 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369821e-97FJ136982.1 Pinus taeda isolate 7100 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369831e-97FJ136983.1 Pinus taeda isolate 7094 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369841e-97FJ136984.1 Pinus taeda isolate 7098 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369851e-97FJ136985.1 Pinus taeda isolate 7102 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369861e-97FJ136986.1 Pinus taeda isolate 7097 anonymous locus CL3412Contig1_04 genomic sequence.
GenBankFJ1369871e-97FJ136987.1 Pinus taeda isolate 7092 anonymous locus CL3412Contig1_04 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-38homeobox protein 5