PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017584-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 300aa    MW: 33336.6 Da    PI: 9.3667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017584-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.4e-17168219556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++++q   Lee F kn++p ++e+  LA +l++  r V vWFqNrRa+ k
  PSME_00017584-RA 168 LRLSRKQCALLEESFLKNSTPEHNEKLALALQLNIRPRHVEVWFQNRRARTK 219
                       57899*********************************************98 PP
2HD-ZIP_I/II98.56.2e-32166253289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       kk+rls++q +lLEesF ++++ e+++K +la +L+++pr v+vWFqnrRARtk+kq+++dye Lkr+ ++l+een++L+ke e+Lr+
  PSME_00017584-RA 166 KKLRLSRKQCALLEESFLKNSTPEHNEKLALALQLNIRPRHVEVWFQNRRARTKLKQTDVDYELLKRCNESLAEENRKLHKELEHLRA 253
                       9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.078161221IPR001356Homeobox domain
SMARTSM003891.3E-10163225IPR001356Homeobox domain
SuperFamilySSF466891.03E-15166229IPR009057Homeodomain-like
CDDcd000861.34E-11166222No hitNo description
Gene3DG3DSA:1.10.10.605.6E-15166219IPR009057Homeodomain-like
PfamPF000462.8E-14168219IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
PfamPF021837.7E-7221255IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-17221264IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDQDCSTGLS LGLSLGTGTA TRQKDHDYTS HRNVNGPSVE LDLFPLAPVL SPETRCGTSL  60
CEKTSPRQNG SRSCNERSAG KANVTIHGVP VSRLSDANKF HASCYSNEEA GTINVSPSNS  120
TVESNATNRV NGYAMFKRKR GGTEELENER AWSRPLSDLE AEVCAKKLRL SRKQCALLEE  180
SFLKNSTPEH NEKLALALQL NIRPRHVEVW FQNRRARTKL KQTDVDYELL KRCNESLAEE  240
NRKLHKELEH LRAMKLSPPL RPPGTLTICP SCERVSAANK SSNFNLAKAQ SMFKRGAFGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772912.16e-52homeobox-leucine zipper protein HAT4-like
RefseqXP_028786410.16e-52homeobox-leucine zipper protein HAT4-like
TrEMBLA9NKN43e-78A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.16e-45Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein