PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017677-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 942aa    MW: 103391 Da    PI: 6.164
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017677-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18110168357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PSME_00017677-RA 110 KYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 168
                       6789*****************************************************97 PP
2START161.75.6e-512564642205
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+ ++ W ++++  ++l +  +g  g+++
  PSME_00017677-RA 256 IAEETLAEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPT-KVAEILKERPSWLRDCRCLDVLTAFPTGngGTIE 347
                       7899******************************************************.7777777777*****************999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a ++l++ Rdf+++Ry+  l++g++v++++S++ +q  p+    +++vRae+lpSg+li+p+++g+s + +v+h+dl+ ++++++l
  PSME_00017677-RA 348 LLYMQTYAATTLASaRDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSippVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVL 440
                       ***********9999*****************************99999999***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXXX CS
             START 182 rslvksglaegaktwvatlqrqce 205
                       r+l++s+++ ++k++ a+l+r+++
  PSME_00017677-RA 441 RPLYESSTVLAQKMTIAALRRLRQ 464
                       *******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.775105169IPR001356Homeobox domain
SMARTSM003891.1E-14107173IPR001356Homeobox domain
SuperFamilySSF466895.13E-16110172IPR009057Homeodomain-like
PfamPF000468.8E-16110168IPR001356Homeobox domain
CDDcd000869.78E-16110170No hitNo description
Gene3DG3DSA:1.10.10.602.2E-18112168IPR009057Homeodomain-like
CDDcd146862.05E-6162201No hitNo description
PROSITE profilePS5084825.069246461IPR002913START domain
CDDcd088753.31E-72250466No hitNo description
SuperFamilySSF559613.43E-35255467No hitNo description
SMARTSM002343.5E-36255465IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-23256461IPR023393START-like domain
PfamPF018521.7E-48256464IPR002913START domain
PfamPF086707.2E-43791941IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MDSYGMPSHV PMHTTQQTQG DNDCAWRHPS TRDDDGNASP YHGIPIISIP CMARIIMTHV  60
MLMGWDGMMR EPRSLAAGVL RAGFESEFRE NLMAVMVNNK DAKNSMDTSK YVRYTSEQVE  120
ALERVYSECP KPSSLRRQQL IRECPILSNI EPKQIKVWFQ NRRCREKQRK EASRLQTVNR  180
KLTAMNKLLM EENDRLQKQV SQLVYENGYM RQQLQNASVA ATDTSCESVV TSGQHQHNPT  240
PQHPPRDASP AGLLSIAEET LAEFLSKAKG AAVDWVQMPG MKPGPDSIGI VAISNTCNGV  300
AARACGLVGL DPTKVAEILK ERPSWLRDCR CLDVLTAFPT GNGGTIELLY MQTYAATTLA  360
SARDFWTLRY TTVLEDGSLV VCERSLSGTQ GGPSIPPVQH FVRAEMLPSG YLIQPCEGGG  420
SIIRIVDHMD LEPWSVPEVL RPLYESSTVL AQKMTIAALR RLRQIAQEAT GEVVFGWGRQ  480
PAVLRTFSQR LSRGFNEAVN GFTDDGWSLM GSDGVEDVTI AINSSPNKHF GSQVNASNGL  540
TTLGGGILCA KASMLLQNVP PALLVRFLRE HRSEWADSNI DAYSAAALKA SPYSVPGSRA  600
GGFSGSQVIL PLAHTVEHEE FLEVIKLEGH GLTQEEAVLS RDMFLLQLCS GIDENAAGAC  660
AELVFAPIDE SFADDAPLLP SGFRVIPLES RTDGSGGPNR TLDLASALEV GSAGTRTSGD  720
SGANSNLRSV LTIAFQFTYE SHLRENVAAM ARQYVRTVVA SVQRVAMALA PSRLSSHVGP  780
RPPPGTPEAL TLARWICQSY RTEFKVLDRL HIGVDLFRAD CDASESVLKL LWHHSDAIMC  840
CSVKSLPVFT FANQAGLDML ETTLVALQDI SLDKILDENG RKSFFTDYGQ IIQQGYAYLP  900
AGICLSSMGR PASYDRAIAW KVLNDEDSTH CIVFMFVNWS FM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3855280.0DQ385528.1 Pseudotsuga menziesii class III homeodomain-leucine zipper protein C3HDZ1 (C3HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ20BK70.0Q20BK7_PSEMZ; Class III homeodomain-leucine zipper protein C3HDZ1
STRINGXP_010247498.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]