PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017682-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 318aa    MW: 35764.5 Da    PI: 6.7839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017682-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09132179455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  PSME_00017682-RA 132 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQALQ 179
                       8*************************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.53E-10126183No hitNo description
SuperFamilySSF474597.98E-17126197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMMAQKLDIS GGNDSSISEL QQTNAHPDLT SMDTINNRKR KCLNPKAKVA DVPSIPTKTK  60
ETDDTERNAK RYKVEESTKD KDDLKDKLEE SNSAETAESC PKQTVDNVKP SSVPVKQDYI  120
HVRARRGQAT DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKAVMLDE IINYVQALQC  180
QVEFLSMKLA AVNPQLDYSM DGGYLTRDVL QPHCSAISKM FVPETTVAAS QINQLQKTPL  240
QHGLQCRPER QEVAIRGMMN TQFTCMNSYA DPTFQMLQVW DDEFQNAVDI ELDSNRSTPL  300
KSHGFHGLLP TGHMKAEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0851330.0EF085133.1 Picea sitchensis clone WS02910_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUY00.0A9NUY0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-54bHLH family protein