PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017726-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 134aa MW: 15266.4 Da PI: 10.0395

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017726-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.5	2.6e-14	13	70	5	57
SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++t+eq+ Le+ + r ps++++ ++A++l +++ ++ ++WFqNr+a ek+ PSME_00017726-RA 13 WNPTNEQIALLEATDSQgIRIPSRDQIDRIASRLrmygNIEGKNLFYWFQNRKAHEKQ 70 9***********9998***********************************996 PP
2	Wus_type_Homeobox	85.9	4.5e-28	10	71	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ W+Pt+eQi +Le+ ++G+r P++++i ri+++L+ yG+ie+kN fyWFQNrka e+q PSME_00017726-RA 10 SNSWNPTNEQIALLEATDSQGIRIPSRDQIDRIASRLRMYGNIEGKNLFYWFQNRKAHEKQT 71 678*********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.2E-9	8	76	IPR009057	Homeodomain-like
Pfam	PF00046	7.2E-12	13	70	IPR001356	Homeobox domain
PROSITE profile	PS50071	9.329	16	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-5	16	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MAEGQSSHSS NSWNPTNEQI ALLEATDSQG IRIPSRDQID RIASRLRMYG NIEGKNLFYW 60 FQNRKAHEKQ TQKQERMASI NPFQETSLAR KSTKIVRSST ISASIFEIKS RTFHLTITKA 120 SSLLLLQCIC VCCI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269\|PubMed:14711878}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016457.1	7e-27	PREDICTED: WUSCHEL-related homeobox 2
Refseq	XP_023873399.1	5e-27	WUSCHEL-related homeobox 2-like
Swissprot	Q6X7K1	8e-27	WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBL	Q14FJ6	9e-31	Q14FJ6_PICAB; Homeodomain transcription factor
STRING	EOY34076	3e-26	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	4e-29	WUSCHEL related homeobox 2

Publications ? help Back to Top
Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development. Plant Cell Physiol., 2015. 56(9): p. 1855-66 [PMID:26220906] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce. BMC Plant Biol., 2016. 16: p. 19 [PMID:26786587] Zhang Z,Tucker E,Hermann M,Laux T A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells. Dev. Cell, 2017. 40(3): p. 264-277.e4 [PMID:28171749]