PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017756-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 163aa MW: 17987.8 Da PI: 10.058

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017756-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	45	71	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 h ++Er+RR ++++ f+ L +llP++s PSME_00017756-RA 45 HMIAERNRRIKLKQYFSLLHSLLPHNS 71 7899*********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.67E-6	40	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-5	44	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.67E-4	44	74	No hit	No description
Pfam	PF00010	1.3E-4	45	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:2.40.30.10	4.7E-5	74	111	No hit	No description
SuperFamily	SSF50447	3.02E-10	74	139	IPR009000	Translation protein, beta-barrel domain
Gene3D	G3DSA:2.40.30.10	1.1E-5	112	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKRSFKFLRK IDDKRREAQR LSQAANTEEQ LAFNASLQNK AAFHHMIAER NRRIKLKQYF 60 SLLHSLLPHN SKEQVPIGAA EVRAIFSSGS GRAARCMVAE GKLVKGCGVR VGAGLECGIA 120 AKDFDDWDVG DKIEAFYFVA KKCTLEEASV TMAVVVAASG VQQ

Functional Description ? help Back to Top
Source	Description
UniProt	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109271	3e-66	BT109271.1 Picea glauca clone GQ03206_K03 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193404.1	3e-30	PREDICTED: translation initiation factor IF-2, chloroplastic
Swissprot	Q9SHI1	4e-27	IF2C_ARATH; Translation initiation factor IF-2, chloroplastic
TrEMBL	A0A2H5PND7	2e-28	A0A2H5PND7_CITUN; Uncharacterized protein
STRING	XP_006478012.1	3e-29	(Citrus sinensis)

Publications ? help Back to Top
Miura E, et al. The balance between protein synthesis and degradation in chloroplasts determines leaf variegation in Arabidopsis yellow variegated mutants. Plant Cell, 2007. 19(4): p. 1313-28 [PMID:17416734] Ehlting J, et al. An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol., 2008. 8: p. 47 [PMID:18433503] Kato Y,Miura E,Ido K,Ifuku K,Sakamoto W The variegated mutants lacking chloroplastic FtsHs are defective in D1 degradation and accumulate reactive oxygen species. Plant Physiol., 2009. 151(4): p. 1790-801 [PMID:19767385] Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083]