PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017842-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 242aa    MW: 26930 Da    PI: 10.3102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017842-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-0989137555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd+++   ++L +ll + +  +++K + ++ L +++++I++Lq
  PSME_00017842-RA  89 HKLVERQRRDKMKALCSTLISLLAEEF--RKTKHTISDKLLEVINHIRHLQ 137
                       99***********************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.70284136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-888151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.05E-888154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-989140No hitNo description
PfamPF000104.3E-689137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008690142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTPGLVVQLD LTTADDSSPA VTQCLQEFVG NFGDPAQTLT CKSSTNSLLN SRKPLSPPTR  60
RNRRKKAVAG GRGHDLEASA DCIGNSDVHK LVERQRRDKM KALCSTLISL LAEEFRKTKH  120
TISDKLLEVI NHIRHLQAKL IEFKKKRDEQ KATVKPFFGS SSVFKTLKTA QVRPSNVLDK  180
FQTIRVSKFG QGVQVTVNTF KNQIEFSSLL MVLEEAEVDV VSATVSAIND RVFYSIHSKV  240
IC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NXF28e-63A9NXF2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-14bHLH family protein