PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017908-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 508aa    MW: 56183.1 Da    PI: 4.5702
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017908-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.5e-091762342
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      +r C+++ +++++++C  ++ +lCe C  + H+       H++v++
  PSME_00017908-RA 17 ARPCDHCMRERARWYCAADEAYLCEHCDGSVHSAnsvarrHERVQI 62
                      578*****************************66788888998875 PP
2CCT69.21.1e-23459502144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  PSME_00017908-RA 459 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 502
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-71562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9781562IPR000315B-box-type zinc finger
PfamPF006431.8E-71762IPR000315B-box-type zinc finger
CDDcd000212.67E-71862No hitNo description
PfamPF062037.5E-18459501IPR010402CCT domain
PROSITE profilePS5101716.152459501IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MKAKKSMVAK AIGGRTARPC DHCMRERARW YCAADEAYLC EHCDGSVHSA NSVARRHERV  60
QIAASCAKLE AGFNGGLIFP GARKRARSSR PHPHGAGQRS VKSKLLGAKD ELAVDPPGVP  120
VPVDSSAGDI NLNLRVDDDD YDYDDDELLP EVPTFVPMAD ELRGSRTRDL VECPVVEPKA  180
DCGGVDLGSC DFDQFLNSET DLSGFGVDMD MDVESIIGHG LVEGLSVLGF CSSNWDEKRN  240
SQFRDLNERI NDGSEPDQHE ERDNGTTEWL NNNRAVKAEE DEDRPDDLCS KPKEEGDHHA  300
AALKAKVEPD EPDQSWDTIE LDLDQYHEDD EEELEDATGL GDQYNCMAQG AADEHGYDYQ  360
DIKIELDPGS IMIGGEKMCS ETKLVSLRLN YEDVLIAWSD RGSPWASLHD CNSDAGGSQD  420
AGLVPELGLS YSNGQLNIIE GGGGGLGQED SCRHGGGGRE ARVLRYREKR RTRLFSKKIR  480
YEVRKLNAEK RPRMKGRFVK RTPGMFCD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469485RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187910.0BT118791.1 Picea glauca clone GQ04010_E13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.12e-25B-box type zinc finger protein with CCT domain