PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018072-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-X1
Protein Properties Length: 423aa    MW: 46436.4 Da    PI: 7.9502
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018072-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.83.6e-06209227120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H C  lCH+GpCppCp+
  PSME_00018072-RA 209 CG-HECVLLCHPGPCPPCPK 227
                       **.***************96 PP
2zf-NF-X124.55.7e-08261280120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H+C+++CH GpCppC++
  PSME_00018072-RA 261 CGLHRCEETCHDGPCPPCQK 280
                       ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359092163IPR019786Zinc finger, PHD-type, conserved site
PfamPF01422160195201IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043209227IPR000967Zinc finger, NF-X1-type
PfamPF014220.0024209226IPR000967Zinc finger, NF-X1-type
CDDcd060082.97E-10251299No hitNo description
SMARTSM004381.1E-4261280IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-6261278IPR000967Zinc finger, NF-X1-type
CDDcd060081.95E-9304346No hitNo description
SMARTSM004380.01314333IPR000967Zinc finger, NF-X1-type
PfamPF014220.15316331IPR000967Zinc finger, NF-X1-type
CDDcd060081.08E-7358401No hitNo description
SMARTSM004380.14368388IPR000967Zinc finger, NF-X1-type
PfamPF014220.0068368387IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MESTRSRAPM AWSTNPLTKT RPNTQPTNDP ELPKYESDSD TSLEEDPKGN DQNLDESIFS  60
EYMSIHGKSS AAVNLSKIKN LLAASKIGAI SCLICLEKVR SIDPIWDCKV GCHAIFHLIC  120
IQEWARQASN SAAERSMARL SRDQFPLAAS AALENSLWHC PKCRVDYPQS QIPRQYKCFC  180
GKLDDPPNDP WITPHTCGEI CGKPLQRNCG HECVLLCHPG PCPPCPKLVK SRCFCGAVSD  240
VRRCGLKDFS CNRSCQRPLA CGLHRCEETC HDGPCPPCQK TGVYSCLCGK VDKECLCSQS  300
GFRCENPCER ELSCKKHKCM KGCHAGPCGE CELQGRRTCP CGKVECNGLS CDAAVPTCGS  360
TCEKMLQCSL HRCPERCHSG PCVETCRIVT TKSCRCGSLK KQAMLCPYGR RDAAHASIAS  420
NSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0854880.0EF085488.1 Picea sitchensis clone WS02717_C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253736.11e-156PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-131NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1U7ZIL21e-155A0A1U7ZIL2_NELNU; NF-X1-type zinc finger protein NFXL2
STRINGXP_010253736.11e-156(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-125sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors