PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018172-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 221aa    MW: 25149.6 Da    PI: 4.6503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018172-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-1359103655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + ErrRR+r+N+++  Lr ++P       +K++Ka+i e A++YI++Lq
  PSME_00018172-RA  59 TISERRRRRRLNERLYSLRAIVPVI-----TKMDKASIIEDAINYIQQLQ 103
                       688*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.19653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1856117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-1158103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1559118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1659108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-969107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLLCTSKLNL QMSGITDRMF DSCACPVSSD EGVGDGSSLC NVFSSDGRRL SYGAASRNTI  60
SERRRRRRLN ERLYSLRAIV PVITKMDKAS IIEDAINYIQ QLQNQVKVVE EDVVHLKENG  120
TPPSENITSE RSQEETCNEC LEFDVSEVKE NVYSIFLYCK CSPRVVLEVN RIIESMEMSV  180
KYANFNSFDG YMLTNIIAQK EDEEKLQVEA LKKNITEVIM E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16168ERRRRRRL
26267RRRRRR
36572RRRLNERL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.22e-14bHLH family protein