PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00018337-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 731aa MW: 79304.5 Da PI: 5.6833

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018337-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.4e-30	351	409	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + gCpv+k+v+r+ ed +++++tYeg+Hnh+ PSME_00018337-RA 351 SDGCQWRKYGQKIAKGNPCPRAYYRCTVSpGCPVRKQVQRCPEDMSILVTTYEGTHNHP 409 7************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-32	335	411	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-27	343	411	IPR003657	WRKY domain
PROSITE profile	PS50811	29.367	345	411	IPR003657	WRKY domain
SMART	SM00774	9.7E-37	350	410	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	352	409	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MAMEGDRSGL GSEMSLITEQ KTPFRQESIQ TNPNPGKKMA MEGRLDRVIE IDLSVQLDEE 60 TGEGDEYPDL EFKEKIKSSL VYNLEQSKDD DGETSKEIHD NYYHDKASSS SRVSTPINSG 120 RDGQTKIESL QIEIGRLKEE NDTLKTDLSR ILHDYHNLQM HLVSVMQQHQ EDNTQLREQD 180 LQGHEDESQL LVLSLNTNPS AKGSKEETMV SAESGKLQLK ENQGRHVDHG ESEENMKGLK 240 LTLDLMDEET SPDYVEGNLS PSPSDTPTRS DGGLVKTDTI DLTSVEGQAC ISTENNSQVK 300 DENMFPREDG SWPPNKTMKS SHDTGKNPET APPMRKARVS VRARCEAPTM SDGCQWRKYG 360 QKIAKGNPCP RAYYRCTVSP GCPVRKQVQR CPEDMSILVT TYEGTHNHPL PVAATAMAST 420 TAAAASMLLS GSTSSLEAMN ANSYFFGAGN KRIGQFLAPT TNITTSANSF PSITLDLTNN 480 PYPHSNLRLA GSAGPPMTTS FPTTFRYPSA GQSVLSHNSS IVASDHSLIA HSGSNLWNTN 540 NVYYSQPHAA TIYNKPSPLG TKYDPASQQF HQRPVPIDPS KAIQGALSRY SSQTLIQNIM 600 AEAAAKSNNS SGSQHSSLAD TVGAATAAIT SDPNFTAALA NAITSIISQG SAQSQSGSSD 660 RALISANGDQ FSASRKWKES MLALYATSDH AASTSRAAPH PASQSNVLFS PASLPFSNKQ 720 WPTASSDNQN L

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MAMEGDRSGL GSEMSLITEQ KTPFRQESIQ TNPNPGKKMA MEGRLDRVIE IDLSVQLDEE  60
TGEGDEYPDL EFKEKIKSSL VYNLEQSKDD DGETSKEIHD NYYHDKASSS SRVSTPINSG  120
RDGQTKIESL QIEIGRLKEE NDTLKTDLSR ILHDYHNLQM HLVSVMQQHQ EDNTQLREQD  180
LQGHEDESQL LVLSLNTNPS AKGSKEETMV SAESGKLQLK ENQGRHVDHG ESEENMKGLK  240
LTLDLMDEET SPDYVEGNLS PSPSDTPTRS DGGLVKTDTI DLTSVEGQAC ISTENNSQVK  300
DENMFPREDG SWPPNKTMKS SHDTGKNPET APPMRKARVS VRARCEAPTM SDGCQWRKYG  360
QKIAKGNPCP RAYYRCTVSP GCPVRKQVQR CPEDMSILVT TYEGTHNHPL PVAATAMAST  420
TAAAASMLLS GSTSSLEAMN ANSYFFGAGN KRIGQFLAPT TNITTSANSF PSITLDLTNN  480
PYPHSNLRLA GSAGPPMTTS FPTTFRYPSA GQSVLSHNSS IVASDHSLIA HSGSNLWNTN  540
NVYYSQPHAA TIYNKPSPLG TKYDPASQQF HQRPVPIDPS KAIQGALSRY SSQTLIQNIM  600
AEAAAKSNNS SGSQHSSLAD TVGAATAAIT SDPNFTAALA NAITSIISQG SAQSQSGSSD  660
RALISANGDQ FSASRKWKES MLALYATSDH AASTSRAAPH PASQSNVLFS PASLPFSNKQ  720
WPTASSDNQN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	337	411	1	74	WRKY transcription factor 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-50	WRKY DNA-binding protein 72