PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018417-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 368aa    MW: 40636.9 Da    PI: 5.7467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018417-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14253296755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+ +  Lr l+P+      +K++K++i+  A++YI+sLq
  PSME_00018417-RA 253 AAERKRRRKVNELLMSLRALVPNI-----TKMDKSSIVSDAIDYIQSLQ 296
                       79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16251315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-16252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-12252296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-14253300No hitNo description
Gene3DG3DSA:4.10.280.109.1E-14253309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFFVHDFVCV GLPGTVFAAA WGFLALSLLP LNGHGRMQSS LNAPMLALMI LFDPKYLNEI  60
GKSVGGSSLE TASYLEMGVA GISSNSIDPL HTLLGMESFG LDDFEDSVFT PSSESLGFSG  120
LESSGSTTIN MDSIMESEDR WSLKSLQCIS QSPYRWINLR EGNLQPLSSN ENYGPTADHT  180
YMPNKNVQNA EPASALCNIV VKDIGRRSKR NCSSMLITFS QNEEHYADKV TNIVDKRGQA  240
SPSNVSWASK NLAAERKRRR KVNELLMSLR ALVPNITKMD KSSIVSDAID YIQSLQKQIK  300
EREVSIPALR FNTAQQSRSN TSELISSNTT GSVDEGDYEK KPTKSQAQQG FKIIEVSLDR  360
LFLDISYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-16bHLH family protein