PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018496-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 480aa    MW: 53814.4 Da    PI: 5.6557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018496-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182572148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00018496-RA 25 KGPWTPEEDQKLIAYIREHGHGNWRSLPKQAGLSRCGKSCRLRWTNYL 72
                      79********************************************97 PP
2Myb_DNA-binding513.2e-1678123148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg ++++E+e +++++++lG++ W+tIa+ ++ gRt++++k+ w+++l
  PSME_00018496-RA  78 RGDFSPQEEENIIQLHAMLGNR-WSTIASQLP-GRTDNEIKNVWNTHL 123
                       899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-271675IPR009057Homeodomain-like
PROSITE profilePS5129426.8132076IPR017930Myb domain
SuperFamilySSF466892.66E-3121119IPR009057Homeodomain-like
SMARTSM007172.3E-162474IPR001005SANT/Myb domain
PfamPF002493.0E-172572IPR001005SANT/Myb domain
CDDcd001675.04E-132772No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2676127IPR009057Homeodomain-like
SMARTSM007172.7E-1477125IPR001005SANT/Myb domain
PROSITE profilePS5129420.6777127IPR017930Myb domain
PfamPF002498.5E-1578123IPR001005SANT/Myb domain
CDDcd001672.25E-1081123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
VYIGLCVYIL NMGRAPCCDK MGLKKGPWTP EEDQKLIAYI REHGHGNWRS LPKQAGLSRC  60
GKSCRLRWTN YLRPDIKRGD FSPQEEENII QLHAMLGNRW STIASQLPGR TDNEIKNVWN  120
THLKKRLLRM GIDPVTHSPA TTSNVTNAKS RNARRQARLP RDILLLPVQS SANVETANCN  180
FADQYFQQQL EYESCCSLVS SSNESPILNE RKDTNELLGQ GTGLQACFQE LELSTTDITD  240
QHGSDPNYST CNFFFNPNVS SELCAEQKPE LFTSVFSVND MNSRSSEGRC IAGTDQKLML  300
DSLKQILETP DDHSHPKIPS GVNANINVKC ELGFSAGNEK ISMANQAYRE TVEEYNMGWH  360
NCSGDSMEYY GSNNTQVCSQ NLSFSPICED AIASMDQLAL SSNYEIEKNI MNSSNSSQIC  420
PVLSFSEAAV IDLCNNNKMH VTNVPRPWPE FRAEQDLNFW MSVLKKVSPL SCVQSESSPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29231275108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-80myb domain protein 16