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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00018694-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | B3 | ||||||||
| Protein Properties | Length: 225aa MW: 25330.2 Da PI: 6.6227 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 30.5 | 6.2e-10 | 5 | 47 | 55 | 99 |
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++ + ++++GW+ Fv+++ ++ +Df+vF++++++ f +v++f++
PSME_00018694-RA 5 SGTSAFFKDGWEIFVSDHSIQPNDFIVFRHVNDMHF--LVQIFES 47
556789***********************9999999..***9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 10.532 | 1 | 48 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 3.05E-9 | 2 | 45 | No hit | No description |
| SuperFamily | SSF101936 | 5.69E-11 | 3 | 53 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 2.9E-7 | 5 | 47 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.2E-10 | 7 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 225 aa Download sequence Send to blast |
MIYGSGTSAF FKDGWEIFVS DHSIQPNDFI VFRHVNDMHF LVQIFESSGY EKQSTFTVKD 60 CESCHLNKRG MSTICNHNSN IGKKKFIGES IFEQERPKGN PLVHAIGDVE STKKRFIQGT 120 GMKVHITETC VETSIANHRS FSPKSHEFLD HCKISVKHTS RHQNSKWNFS ENQMGLSAKQ 180 PIILDSEDES DSQASPAYGH DQDTIASCHS GSEPFQEELS SLGKI |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G17010.1 | 2e-06 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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