PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00018790-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 161aa MW: 18457.7 Da PI: 9.8353

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018790-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.6e-07	9	45	17	53
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++F+kn ps + L+k+l+L+ rqV +W +N R+ PSME_00018790-RA 9 QVFAKNELPSIPCKLVLSKQLDLPYRQVHMWLKNARY 45 58*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	7.23E-5	2	51	No hit	No description
SuperFamily	SSF46689	2.22E-7	8	54	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-4	9	45	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-6	10	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.778	11	50	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MPMQLMFCQV FAKNELPSIP CKLVLSKQLD LPYRQVHMWL KNARYMSLKK KNMNRLKESA 60 TPVISSNTRR LKVESSKSTP QIKEPDDVGN SYLTEMEKLG NIELKLESLR KILETVCPKE 120 GADFSNDKNP EGTSNLLSEK LLMYVPIMDL REKSLQVAPA R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-07	pathogenesis related homeodomain protein A