PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018808-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32845.4 Da    PI: 9.7445
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018808-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-19160214256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+  +++eq   Lee F knr p  ++++ LA +l+L  rqV vWFqNrRa+ k
  PSME_00018808-RA 160 KKKLILSREQCALLEESFLKNRAPEPDQKQALALQLNLRPRQVEVWFQNRRARTK 214
                       6777899**********************************************98 PP
2HD-ZIP_I/II98.46.7e-32160249191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+ ls+eq +lLEesF +++  ep++K++la +L+l+prqv+vWFqnrRARtk+kq E+d e Lkr+ ++l++en++L+ke e+Lr +l
  PSME_00018808-RA 160 KKKLILSREQCALLEESFLKNRAPEPDQKQALALQLNLRPRQVEVWFQNRRARTKLKQAEVDRELLKRCNESLVAENRKLHKELENLR-AL 249
                       58999*************9999*****************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-18152217IPR009057Homeodomain-like
PROSITE profilePS5007116.714156216IPR001356Homeobox domain
SMARTSM003892.8E-15158220IPR001356Homeobox domain
CDDcd000865.65E-15160217No hitNo description
PfamPF000463.4E-16160214IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-17166214IPR009057Homeodomain-like
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
SMARTSM003405.8E-15216259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDCSTDLSLG LRIGTGRITT REKDREYASQ RNVNGPPVQL DLFPLAPFLP PGEKTLRGIN  60
RSGGGSDRSA AKAKVPILPL PVSRLSDAYK IPVSCYYNEH AGTHTINVSS SSNSTVDSNA  120
ANPVSRYDMF KRKRGATQEL ENDLLCSSVI SSVEEEGCSK KKLILSREQC ALLEESFLKN  180
RAPEPDQKQA LALQLNLRPR QVEVWFQNRR ARTKLKQAEV DRELLKRCNE SLVAENRKLH  240
KELENLRALK MSSTPAATPT MCPSCERISN GDTNSHFTLA KVKSVYARGA LNFRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848871.12e-48homeobox-leucine zipper protein HAT22
TrEMBLA9NKN42e-77A9NKN4_PICSI; Uncharacterized protein
STRINGERN104527e-48(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-44HD-ZIP family protein