PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018809-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28125.8 Da    PI: 10.6711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018809-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-19109163256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ +f++eq   Lee F kn+ p  ++++ LA +l+L  rqV vWFqNrRa+ k
  PSME_00018809-RA 109 KKKLRFSREQCALLEESFLKNKAPEPKQKQALALQLNLRPRQVEVWFQNRRARTK 163
                       78899************************************************98 PP
2HD-ZIP_I/II1024.9e-33109198191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+r+s+eq +lLEesF +++  ep++K++la +L+l+prqv+vWFqnrRARtk+kq  +d+e Lkr+ ++l+een +L+ke e+Lr +l
  PSME_00018809-RA 109 KKKLRFSREQCALLEESFLKNKAPEPKQKQALALQLNLRPRQVEVWFQNRRARTKLKQSKVDCELLKRCNESLVEENIKLHKELENLR-AL 198
                       59*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.265105165IPR001356Homeobox domain
SMARTSM003895.3E-16107169IPR001356Homeobox domain
CDDcd000864.34E-16108166No hitNo description
SuperFamilySSF466891.37E-18108172IPR009057Homeodomain-like
PfamPF000467.4E-17109163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-18109168IPR009057Homeodomain-like
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
SMARTSM003408.9E-16165208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVSRGGERRT ARSGHRLGLR GKEQAHRGND QSGIYHESFI ENLIKVLTNP IITGTRPGAG  60
GITAACTCVF FQLLKAQPKR PRIAVVVVAI DQRQKLSVLS SVEQEGCPKK KLRFSREQCA  120
LLEESFLKNK APEPKQKQAL ALQLNLRPRQ VEVWFQNRRA RTKLKQSKVD CELLKRCNES  180
LVEENIKLHK ELENLRALKM SSPLTPAATL TMCPSCERVL DADTNSHFTL AKVKSMFMRG  240
SAGHIEFLGI G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022752662.11e-50homeobox-leucine zipper protein HAT22-like
SwissprotA2YW039e-46HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD09e-46HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA9NKN41e-52A9NKN4_PICSI; Uncharacterized protein
STRINGERN104522e-49(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-42homeobox from Arabidopsis thaliana