PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018939-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 316aa    MW: 35520.2 Da    PI: 8.0584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018939-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-15147196254
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                       +y+G r++  +g++++eIrd    g + +r++lg+f taeeAa a+++a++ ++
  PSME_00018939-RA 147 RYRGLRRRL-WGKFAVEIRDS---GrRGARVWLGTFKTAEEAAMAYDKAALLIH 196
                       7*****777.**********4...5444*********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.68E-25146206No hitNo description
PROSITE profilePS5103221.232147205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-26147205IPR001471AP2/ERF domain
PfamPF008473.9E-10147193IPR001471AP2/ERF domain
SMARTSM003802.6E-27147211IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-19147207IPR016177DNA-binding domain
PRINTSPR003671.9E-9148159IPR001471AP2/ERF domain
PRINTSPR003671.9E-9171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MALETASPNN TEGSYQHEHG PVVSAERILE DVWAHFIAAR KSDQPIHDGL QPANHTKEES  60
CCNVEDQDQG QVQYPLLLPL KENDSEDMIL FQLLNEPAAN LGWTAIHNHQ EMAIPGATGS  120
MAYTPAICNT KMTQAQGEAV EKPSTKRYRG LRRRLWGKFA VEIRDSGRRG ARVWLGTFKT  180
AEEAAMAYDK AALLIHRTRA SLNFPIEVVT NALADTTEKW SSKLISSRQK QKQKHKHIKV  240
SHHHIELRKK MDALDAGSTI RVDFSKDDAM SSMSQKIRSS DDIHRVDFVL ESPPLEKRFI  300
CSAARGLVNE TKIIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22146208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-22146208466ATERF1
3gcc_A2e-22146208466ATERF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-22ethylene responsive element binding factor 1