PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00018961-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 218aa MW: 24795.2 Da PI: 5.726

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018961-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	362.8	1.3e-111	5	211	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+p ++pvlrp+gidlkdg+lfa+lsak+q k vgipecegaatakspwna PSME_00018961-RA 5 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFASLSAKTQEKAVGIPECEGAATAKSPWNAY 97 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rew+ffdkpr afe +ysgrgwhesrkqv+++fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00018961-RA 98 ELFDMYVLEGESMREWIFFDKPRWAFE----------NYSGRGWHESRKQVIEDFGGLKRSYYMDPQPSTQFEWHLYEYEINDYDACALYRLE 180 **********************9..........6*************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00018961-RA 181 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 211 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
PGLCPPPAAF LGPKCALWDC SRPAQGTKWC QDYCSDFHMT LASNEGAPRM RPVLRPGGID 60 LKDGPLFASL SAKTQEKAVG IPECEGAATA KSPWNAYELF DMYVLEGESM REWIFFDKPR 120 WAFENYSGRG WHESRKQVIE DFGGLKRSYY MDPQPSTQFE WHLYEYEIND YDACALYRLE 180 LKMVCSKKNT KGKVGGDPLV DLQHQLGKLS AEFSWVEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	2e-34	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057344.1	1e-118	PREDICTED: transcription factor VOZ1
Refseq	XP_010057345.1	1e-118	PREDICTED: transcription factor VOZ1
Refseq	XP_010057346.1	1e-118	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-111	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A059C8K5	1e-116	A0A059C8K5_EUCGR; Uncharacterized protein
STRING	XP_010057344.1	1e-117	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-113	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]