PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018986-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 246aa    MW: 28107.6 Da    PI: 8.0894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018986-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-0978122446
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       W+ ++ +l+ +a + + ++   +W+++a++++ g+t+ +++ ++ +
  PSME_00018986-RA  78 WSLQLNKLFENALAIYDKDtpdRWEKVAKMLP-GKTAIDVRKHYED 122
                       ********************************.***********76 PP
2Myb_DNA-binding42.21.8e-13186230347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ +++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  PSME_00018986-RA 186 PWTEDEHRQFLLGLHKFGKGDWRSISRNYVVSRTPTQVASHAQKY 230
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-43138IPR009057Homeodomain-like
SuperFamilySSF466891.24E-1071126IPR009057Homeodomain-like
SMARTSM007173.4E-674126IPR001005SANT/Myb domain
PfamPF002494.7E-778123IPR001005SANT/Myb domain
PROSITE profilePS500906.00578124IPR017877Myb-like domain
CDDcd001674.02E-584124No hitNo description
Gene3DG3DSA:1.10.10.604.7E-489124IPR009057Homeodomain-like
PROSITE profilePS5129418.453179235IPR017930Myb domain
SuperFamilySSF466891.24E-16180235IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-18182233IPR006447Myb domain, plants
SMARTSM007173.4E-11183233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10183229IPR009057Homeodomain-like
PfamPF002492.0E-11186230IPR001005SANT/Myb domain
CDDcd001677.77E-9186231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTDHLPLFLE VRTSGEKLGA PFKYNAGWFK EEKLQLIGKE NWRHIKADSD ESDFKICAMW  60
EMEFPSQETS LSSSGSFWSL QLNKLFENAL AIYDKDTPDR WEKVAKMLPG KTAIDVRKHY  120
EDLVEDGTCI EDGRVALPTY SNSSCTLEWI AEKSGDMHGL KQQFGSGGGK GPSTQPSEQE  180
RKKGVPWTED EHRQFLLGLH KFGKGDWRSI SRNYVVSRTP TQVASHAQKY FIRLSSDNKN  240
KRRSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2070148381RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1070220.0BT107022.1 Picea glauca clone GQ03101_N16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480971.12e-72transcription factor DIVARICATA
SwissprotQ8S9H71e-65DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067EDJ95e-71A0A067EDJ9_CITSI; Uncharacterized protein
STRINGXP_006480971.17e-72(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-64MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]