PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019067-RA
Common NameC3HDZ2
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 829aa    MW: 91140.2 Da    PI: 6.3569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019067-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-181572457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PSME_00019067-RA 15 YVRYTAEQVEALERLYNDCPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 72
                      5789****************************************************97 PP
2START1618.8e-511603672204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++++++ka++++  W +++ +++g++++ +++ s++++g a+ra+g+   ++   v+++l+d++ W ++++  ++l +  +g  g+++
  PSME_00019067-RA 160 IAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGIAARACGFAGLEPS-KVADILKDRPAWLHDCRCLDVLTAFPTGkgGTIE 251
                       7899******************************************************.9999999999************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++l+p Rd +++Ry+  l++g++v++++S++ +q+ p+    +++vRa++lpSg+li+p+++g++ +++v+h+dl+ +++++++
  PSME_00019067-RA 252 LLYTQMYAPTTLAPaRDLWTLRYTSLLEDGSLVVCERSLTGTQSGPNmpsVQHFVRAQMLPSGYLIRPCEGGGCIIHIVDHMDLEPWTVPEVI 344
                       **********************************************9988899**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+++ ++k++  +l++++
  PSME_00019067-RA 345 RPLYESSAVLAQKMTITALRHLR 367
                       ***************99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.111973IPR001356Homeobox domain
SMARTSM003892.7E-141177IPR001356Homeobox domain
SuperFamilySSF466897.7E-161476IPR009057Homeodomain-like
CDDcd000863.28E-151474No hitNo description
PfamPF000461.1E-151572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-171672IPR009057Homeodomain-like
CDDcd146861.74E-666105No hitNo description
PROSITE profilePS5084822.668150378IPR002913START domain
CDDcd088751.27E-72154368No hitNo description
SuperFamilySSF559611.07E-36159371No hitNo description
Gene3DG3DSA:3.30.530.201.2E-21159365IPR023393START-like domain
SMARTSM002341.0E-37159369IPR002913START domain
PfamPF018522.8E-48160367IPR002913START domain
PfamPF086701.1E-51686828IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MLVTAQSCAM EAGKYVRYTA EQVEALERLY NDCPKPSSLR RQQLIRECPI LSHIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ TVNRKLTAMN KLLMEENDRL QKQVSQLVYE NGYFRQQIQT  120
VSIATTDTSC ESVVTSGPHQ HHLTPQHPPR DANPAGFLSI AEETLTQFLS KATETAVDWI  180
QMPGMKPGPD SIGIVTISNS CTGIAARACG FAGLEPSKVA DILKDRPAWL HDCRCLDVLT  240
AFPTGKGGTI ELLYTQMYAP TTLAPARDLW TLRYTSLLED GSLVVCERSL TGTQSGPNMP  300
SVQHFVRAQM LPSGYLIRPC EGGGCIIHIV DHMDLEPWTV PEVIRPLYES SAVLAQKMTI  360
TALRHLRQVA QEVSGEVVLG WGRQPAALRA FSQRLCRGFN DAVNGFVDDG WSLLGSDGVE  420
DVIIAINSTP NKLLGSQLAS SDGLSALNGG ILCAKASMLL QNVPPALLVR FLREHRSEWA  480
DCNIDAYSSA TMKANAFNVP GSLGGITGSQ VILPLAHTVE HEEFLEVIKL EGHGLTHEEA  540
LLSKDMFLLQ LCSGIDEQAA GFCAQLAFAP IDASFADDAP LLPSGFRDTS PPNRTLDLAS  600
ALEVGSAGAR ASGDCGDSPY NLRSVLTIAF QFTYQNHVRD NVASMARQYV RHVIASVQRV  660
SVALAPSLQS PHLGPRPPPG TPEALTLTRW ICQSYRMHLG LELLGSNSET NESVLKLLWH  720
HSDGIMCCSW KTLPVFTFAN QAGLDMLETT LVALQDISLE KILDDNGRKR LCSDFTQIMQ  780
QGYAYLPAGI CISSMGRPVS YDRAIAWKVL NDEDSTHCIA FMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3855290.0DQ385529.1 Pseudotsuga menziesii class III homeodomain-leucine zipper protein C3HDZ2 (C3HDZ2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020528699.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ1WD280.0Q1WD28_PSEMZ; Class III homeodomain-leucine zipper
STRINGERN151100.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Floyd SK,Zalewski CS,Bowman JL
    Evolution of class III homeodomain-leucine zipper genes in streptophytes.
    Genetics, 2006. 173(1): p. 373-88
    [PMID:16489224]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]