PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019230-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 184aa    MW: 20209 Da    PI: 5.8337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019230-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.4e-3169315101
            DUF260  15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                       dCv+apyf++++ +++fa vhk+FGasnv+kll +lp  +r +a+ ++ yeA+ar++dPvyG+v +i++lqqq+++l+aela ++++l
  PSME_00019230-RA   6 DCVFAPYFCSDEgAAHFATVHKIFGASNVSKLLLHLPMPDRCEAVVTISYEAQARLQDPVYGCVTHIFALQQQVASLQAELAFMQAQL 93 
                       7*********9989********************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.606193IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-28690IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDNILDCVFA PYFCSDEGAA HFATVHKIFG ASNVSKLLLH LPMPDRCEAV VTISYEAQAR  60
LQDPVYGCVT HIFALQQQVA SLQAELAFMQ AQLASRVSSG STSISANHPV ISSSSYSQHL  120
QFPAHLSLPC QPIPRPYNAL LSRVKEENSC GFATYMDCDF SMSPSDSSSP LMEVLQRCRS  180
LEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-24611325131LOB family transfactor Ramosa2.1
5ly0_B1e-24611325131LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397266.12e-49LOB domain-containing protein 16-like
TrEMBLD5A9D34e-91D5A9D3_PICSI; Uncharacterized protein
STRINGGLYMA10G04050.23e-46(Glycine max)
STRINGXP_010262268.13e-46(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-46lateral organ boundaries-domain 29