PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019233-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 296aa    MW: 33765.2 Da    PI: 7.3915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019233-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11105152655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++Er+RR+++++ f++Lr+llP+       +K + ++ + +Av+Y+++Lq
  PSME_00019233-RA 105 IIIERQRRKEMKTLFSTLRSLLPEeH---LRGKRTVSDQVLEAVNYVRDLQ 152
                       689*********************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.799151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-10101156No hitNo description
Gene3DG3DSA:4.10.280.104.0E-11101167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-13102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8104152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-6105157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSRDSFGDFV LHWKARTDRI LILLQKIVDP LARLVSSNSN PVLSTPDPFL SSYNTDHHDD  60
IFTGTPAGLW NRPVLPAFCN SSSPTDGQYW NRLPVVAPLD KKNPIIIERQ RRKEMKTLFS  120
TLRSLLPEEH LRGKRTVSDQ VLEAVNYVRD LQQKVQDLSA EREKMKAGSD QNAKVSMEKS  180
FDKTPPFGGP DREYPSLKIN SVSSGVQIWM NSLGHEIVYS EILLALEEEG LEVVSAASST  240
INNRVYHTIH TKVFEHNIFN VETLYHKLWH LIRTKYSLNE NLQSLNEDLQ NAQARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH51e-89B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.16e-17bHLH family protein