PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019383-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 299aa    MW: 34750.5 Da    PI: 5.6318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019383-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-162269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd +l+++++++G g+W+  a+  g+ R++k+c++rw +yl
  PSME_00019383-RA 22 KGPWTVEEDMRLIQYINLHGEGRWSFLAKAAGLERSGKSCRLRWVNYL 69
                      79********************************************97 PP
2Myb_DNA-binding47.93e-1575118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r++ T eE+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  PSME_00019383-RA  75 RNKITHEEERLIIELHGRWGNR-WSRIAQNLP-GRTDNDIKNYWRT 118
                       6788******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6981769IPR017930Myb domain
SuperFamilySSF466895.39E-3019116IPR009057Homeodomain-like
SMARTSM007178.9E-152171IPR001005SANT/Myb domain
PfamPF002492.2E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-232376IPR009057Homeodomain-like
CDDcd001671.01E-102469No hitNo description
PROSITE profilePS5129425.85770124IPR017930Myb domain
SMARTSM007171.1E-1474122IPR001005SANT/Myb domain
PfamPF002494.8E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2377124IPR009057Homeodomain-like
CDDcd001672.05E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDSRAWRVAS VHEDRKETRT RKGPWTVEED MRLIQYINLH GEGRWSFLAK AAGLERSGKS  60
CRLRWVNYLR PDLKRNKITH EEERLIIELH GRWGNRWSRI AQNLPGRTDN DIKNYWRTRL  120
KKKINLQAKS CSSGMGTDSR VHFEHSSTDS YCLTALSERK FDLDCLEPLT SSPRQNTEEI  180
AVQTNTNPYL LEDISSQEIS ITEGNTENGF QEVHDLQITH DREPEGSDNL FESIVAYNFS  240
ISTDLLSSEF FADRKIPHSS SLEAASDCES YLNYYFDTLW NMDEEDERFI RTQHSGGMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-29221244105MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031495.17e-57PREDICTED: myb-related protein 305
STRINGEOY024213e-56(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.18e-56myb domain protein 24