PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019812-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 184aa    MW: 20916.8 Da    PI: 8.304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019812-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-1164107755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N+ + +Lr+++Pk +      K++K +i e A+ Y+++Lq
  PSME_00019812-RA  64 HSERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIEDAISYVSDLQ 107
                       57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.64657106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.35E-1160111No hitNo description
SuperFamilySSF474593.53E-1562120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1163112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1464120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-964107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDTAMLCTAD EVLKFDYDHQ INNKLWMENL HDIGWGDSDP ENMGASKPAT CKTNQLQSGS  60
KNVHSERKRR KKLNDTLYTL RSVVPKISKM DKQSIIEDAI SYVSDLQKKI REIEGEIEGL  120
CSSNKGDYDT QIKPNYAMEK RFTESCDEKK SGNKLKPGKV LEVRSLGNVG ADKLEDMVRK  180
IMKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1068132e-92BT106813.1 Picea glauca clone GQ03011_B21 mRNA sequence.
GenBankEF6785712e-92EF678571.1 Picea sitchensis clone WS02928_G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-61B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-17bHLH family protein