PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019813-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 254aa    MW: 28848.1 Da    PI: 7.3104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019813-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-1174116855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+ + +Lr+++Pk +      K++K +i e A+ Y+++Lq
  PSME_00019813-RA  74 SERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIEDAISYVSDLQ 116
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.66566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1571129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1072121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-1073120No hitNo description
PfamPF000101.2E-873116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1474129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MIPMNVSPGM DTAMLCTAGE ILKFDYDHQI NNKLWMENLH DIGWGDSDPE NMGASKPATC  60
KTNQLQSASK NLHSERKRRK KLNDTLYTLR SVVPKISKMD KQSIIEDAIS YVSDLQKKIR  120
EIEGEIEGLC SSNKGDYDTQ IKPNYAMEKR FTESCDEKKS GNKLKPGKVL EGKLVEIRNV  180
GTDGIYHVRI ECKKDAEVLV DLTRVLESFP VEIINSNTCC FDEAIRYTLY VRSLGNVGAD  240
KLEDMILKIM RRNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT71e-108B8LPT7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-21bHLH family protein