PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019830-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 637aa    MW: 70426.8 Da    PI: 6.2876
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019830-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17180229155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PSME_00019830-RA 180 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 229
                       78*******************......55*************************98 PP
2AP2384.2e-12272322155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV+ +k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ + +g
  PSME_00019830-RA 272 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDRAAIRCNG 322
                       79********.7******5553..2.26**********99**********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-15180239IPR016177DNA-binding domain
PfamPF008475.1E-9180229IPR001471AP2/ERF domain
CDDcd000183.02E-12181239No hitNo description
PROSITE profilePS5103217.609181237IPR001471AP2/ERF domain
SMARTSM003807.2E-32181243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17181238IPR001471AP2/ERF domain
CDDcd000183.74E-12272332No hitNo description
SuperFamilySSF541711.5E-15272331IPR016177DNA-binding domain
PfamPF008471.2E-7272322IPR001471AP2/ERF domain
SMARTSM003809.2E-29273336IPR001471AP2/ERF domain
PROSITE profilePS5103214.341273330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-14273330IPR001471AP2/ERF domain
PRINTSPR003677.0E-5274285IPR001471AP2/ERF domain
PRINTSPR003677.0E-5312332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MEMMLDLNAV DKIEVDGSSP EPDSVCSDDA MKSDIISSDN KPTSNQDDSG TSNSSVVNTV  60
AVENGCPDFE ASSMCSNTNS QSLKAAIFLG SPGSDRAQAA HPPGNMIFLA NENTGRNDCV  120
TRQFFPVEVP EKPPPDTLTR SRWTDVTFCD SPEPAGNQKA MTEITQPAKK SRRGPRSRSS  180
QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGA EADINFNHSD  240
YEEDMKQMNN LSKEEFVHIL RRQSTGFSRG SSKFRGVTLH KCGRWEARMG QFLGKKYIYL  300
GLFDSEIDAA RAYDRAAIRC NGAGAVTNFE PSLYQDELVA EGETGGNDQN LDLRLATSAS  360
TYSTVQSDEH KKTQFKSSNS DSTNFSEVLD WKKARLLNTR SEDCNIQQTQ LGQLFNVPSS  420
STGEKILSFQ HLSNTEGGNN FTFLQPQNQV KCSIPDKGDR QDIINFLDCN SVRHSRPIED  480
KTVNHFSEQA PGWNGIHSRS IRNINVPNNG NYDLQHERNR CADGSIVSLL PPEKTPGWTW  540
QLQASATSLP AAPVFSSAAS SGFSPQIISA AVPSSHDWLQ KAGFQYMDQS IGRTSFNERP  600
KVAFQEDIAM GIDHVLSLSS GLTTTKYKAP GLSRERE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1182870.0BT118287.1 Picea glauca clone GQ04004_L03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022146223.11e-110ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A0K0M7770.0A0A0K0M777_PINTB; AP2L3
STRINGGorai.009G104200.11e-108(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-90AP2 family protein