PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00019835-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 305aa    MW: 33667.8 Da    PI: 10.1956
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00019835-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.38.2e-162686257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+   +   +p +ee++++  +l    ++++ +V++WFqNr+a+ek+
  PSME_00019835-RA 26 KTRWHPKPDQVQILEAILSSgMVNPPREEIKRIRGQLekfgHVEDVNVFYWFQNRKAREKR 86
                      89*****************99***************************************7 PP
2Wus_type_Homeobox103.21.8e-332588265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRW P+p+Q++iLe++ +sG+++P++eei+ri+ +Le++G++ed NVfyWFQNrkaRe++k+
   PSME_00019835-RA 25 PKTRWHPKPDQVQILEAILSSGMVNPPREEIKRIRGQLEKFGHVEDVNVFYWFQNRKAREKRKR 88
                       589***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.3292287IPR001356Homeobox domain
SuperFamilySSF466895.26E-112390IPR009057Homeodomain-like
SMARTSM003891.2E-52491IPR001356Homeobox domain
CDDcd000863.36E-62588No hitNo description
PfamPF000461.3E-132686IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-62694IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRSLYPGGSL SHHYVPESER IIPVPKTRWH PKPDQVQILE AILSSGMVNP PREEIKRIRG  60
QLEKFGHVED VNVFYWFQNR KAREKRKRQL QDEEKSESRA KGARTLSSSS PTSTTSRSTS  120
VQSQPVTIVN KTPLSSAGPA SSFSGHHYNH QVNQKMSTSQ YSNMQPIGAG AATERRGIVN  180
EGGVREDPIN IHNSVITVIV NDIPIQVPKD PINLRAFFGD DALLLHSSGH SVLVNDWGFT  240
IEGLEDGATY FLLAGRTSDD AGGENVKGAK ALGSEDLKIS ARQSRGVVKA HWKGADMVAE  300
RRKSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8B61e-105R9R8B6_PICAB; WUSCHEL homeobox protein WOX8C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-28homeobox-3