PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019997-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 127aa MW: 15008 Da PI: 8.4494

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019997-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	227.3	3.4e-70	2	120	99	217
VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvd 191 +lege++rewlffdkprr fesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrlelk+v PSME_00019997-RA 2 YVLEGESMREWLFFDKPRRDFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLELKMVC 94 69***************************************************************************************** PP VOZ 192 ekksakgkvskdsladlqkklgrlta 217 +kk++kgkv d+l+dlq++lg+l+a PSME_00019997-RA 95 SKKNTKGKVGGDPLVDLQHQLGKLSA 120 **********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MYVLEGESMR EWLFFDKPRR DFESGNRKQR SLPDYSGRGW HESRKQVIKD FGGLKRSYYM 60 DPQPSTQFEW HLYEYEINDC DACALYRLEL KMVCSKKNTK GKVGGDPLVD LQHQLGKLSA 120 EFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018838478.1	9e-66	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018838479.1	9e-66	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018838480.1	8e-66	PREDICTED: transcription factor VOZ1-like isoform X2
Refseq	XP_018855072.1	1e-66	PREDICTED: transcription factor VOZ1-like
Refseq	XP_018860320.1	7e-66	PREDICTED: transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	8e-64	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2I4HG63	3e-65	A0A2I4HG63_JUGRE; transcription factor VOZ1-like
TrEMBL	A0A438JKF9	4e-66	A0A438JKF9_VITVI; Transcription factor VOZ1
STRING	ERN14021	1e-64	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-66	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]