PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019999-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 640aa MW: 71107 Da PI: 8.1986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019999-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	6.8e-11	181	231	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 rah+ +Er RR+++++ ++L +llP+ +++K + ++ L +Ave+I++Lq PSME_00019999-RA 181 RAHKLVERHRRNKMRTLCSTLISLLPEeY---RKTKHTLSDKLLEAVEHIRHLQ 231 78***********************77...*******************9 PP
2	HLH	16.7	1.3e-05	483	509	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 ah+ +Er RR+++++ ++L +llP+ PSME_00019999-RA 483 AHKLVERHRRNKMRTLCSTLISLLPEE 509 8************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.909	178	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-11	181	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.18E-10	181	234	No hit	No description
Pfam	PF00010	1.0E-7	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-11	182	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-4	184	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-6	483	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MFSEGQRLRM EDLWRTILYK YPYELCSSSY SQAAACLPHY PANIIDTNEG IQIQTQTKSV 60 KVLETRSCID DDAPATVILD ALSTKRPHDY GMLETAPLCP MVQLDRSGAD DSSPAITHVW 120 QKFVANIGEP DQTLTCNIAA NSFLNSGGPL FHPTTSRQKK KTGRGMGQHH EAGRECIGNN 180 RAHKLVERHR RNKMRTLCST LISLLPEEYR KTKHTLSDKL LEAVEHIRHL QEKLVELGKK 240 RDELKAAIKR FSHSSCVCES LQDSEVRPSN VRDKFQTTRV SKFGEGIQVT VNTFKNHIDF 300 SSILMVLEGA GLEVVSATVS AVGDRVFYSV HSKAAACLPH YPANIIDTNE GIQIQTQTKS 360 VKVLETRSCI DDDAPATVIL DALSTKRPHD YCLLETAPLC PMVQLDRSGA DDSSPAITHV 420 WQKFVANIGQ PDQTLTCNIA ANSFLNSGGP LFHPTTSRQK KKTGGGMGQH HEAGMESIGN 480 NHAHKLVERH RRNKMRTLCS TLISLLPEEY RKLVELGKNR DELKAAIKPF SHSSCVCESL 540 QDSEVRPSNV RDKFQTSRVS KFGEGIQVTV NTFKSHIDFS SILMVLEGAG LEVVSATVSA 600 VGDRVFYSIH SKLSDFRNFD CAVLHGTIDQ LMNTKLPMVK

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MFSEGQRLRM EDLWRTILYK YPYELCSSSY SQAAACLPHY PANIIDTNEG IQIQTQTKSV  60
KVLETRSCID DDAPATVILD ALSTKRPHDY GMLETAPLCP MVQLDRSGAD DSSPAITHVW  120
QKFVANIGEP DQTLTCNIAA NSFLNSGGPL FHPTTSRQKK KTGRGMGQHH EAGRECIGNN  180
RAHKLVERHR RNKMRTLCST LISLLPEEYR KTKHTLSDKL LEAVEHIRHL QEKLVELGKK  240
RDELKAAIKR FSHSSCVCES LQDSEVRPSN VRDKFQTTRV SKFGEGIQVT VNTFKNHIDF  300
SSILMVLEGA GLEVVSATVS AVGDRVFYSV HSKAAACLPH YPANIIDTNE GIQIQTQTKS  360
VKVLETRSCI DDDAPATVIL DALSTKRPHD YCLLETAPLC PMVQLDRSGA DDSSPAITHV  420
WQKFVANIGQ PDQTLTCNIA ANSFLNSGGP LFHPTTSRQK KKTGGGMGQH HEAGMESIGN  480
NHAHKLVERH RRNKMRTLCS TLISLLPEEY RKLVELGKNR DELKAAIKPF SHSSCVCESL  540
QDSEVRPSNV RDKFQTSRVS KFGEGIQVTV NTFKSHIDFS SILMVLEGAG LEVVSATVSA  600
VGDRVFYSIH SKLSDFRNFD CAVLHGTIDQ LMNTKLPMVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-14	bHLH family protein