PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020000-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 349aa MW: 39207 Da PI: 9.5928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020000-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	173	220	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++R ++++ ++L llP+ + ++++ + + L +++eYI++L+ PSME_00020000-RA 173 KVVEKQRGNKMKALCSTLVLLLPEEF--NKTRQTLPDKLLEVIEYIRHLK 220 579*******************65..9999**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.981	167	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-5	172	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-4	172	223	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.6E-5	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEDLGMKNYP YKYPYKPSST SYCQEAACLP YYIGNIDTDE CIQIRRPIKS IKFVEPGTCI 60 VDDAPVIFDA LTTKKPHDYS LLGAASLGPD VRLDQTAKDG SSLAVTQSWQ KLAAKFGDPA 120 QTLTYNSLAS SSLNSSRPFF PPTQIHRRKK TTAVEGRDHK ASRKCIVNGH IRKVVEKQRG 180 NKMKALCSTL VLLLPEEFNK TRQTLPDKLL EVIEYIRHLK DKLIKVGDKR DKLNFSATVK 240 PISNGSCVYR SLQTSHAQPS NVPEKFQTIR VNKFGPGIQV TVNTFKNQID FSSLLMVLEE 300 AEVEVVSTTV SGVNDRVFYS IHSKLSDFHH FDSAVLHRRI DQLMNGILP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEDLGMKNYP YKYPYKPSST SYCQEAACLP YYIGNIDTDE CIQIRRPIKS IKFVEPGTCI  60
VDDAPVIFDA LTTKKPHDYS LLGAASLGPD VRLDQTAKDG SSLAVTQSWQ KLAAKFGDPA  120
QTLTYNSLAS SSLNSSRPFF PPTQIHRRKK TTAVEGRDHK ASRKCIVNGH IRKVVEKQRG  180
NKMKALCSTL VLLLPEEFNK TRQTLPDKLL EVIEYIRHLK DKLIKVGDKR DKLNFSATVK  240
PISNGSCVYR SLQTSHAQPS NVPEKFQTIR VNKFGPGIQV TVNTFKNQID FSSLLMVLEE  300
AEVEVVSTTV SGVNDRVFYS IHSKLSDFHH FDSAVLHRRI DQLMNGILP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	3e-08	bHLH family protein