PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020009-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 327aa    MW: 35837.4 Da    PI: 7.2036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020009-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431402151055
                       HHHHHHHHHHHHHHHCTSCCC................................TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkas.............................kapskK.lsKaeiLekAveYIksLq 55 
                       + RR++i +++  L++l+P +s                             ++ +     Ka +L + v+Y++sLq
  PSME_00020009-RA 140 QVRREKISERMKFLQDLVPGCSkvvhdicvlffsdhidcfakwifhaahlnRGLCLQaHGKAVMLDEIVNYVQSLQ 215
                       67******************999***********************999994444444789999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.648130214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9140160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9140159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9194226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9196233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
RAARLSCFGV GGGSLNLSGS AGAPFHRSVI DNSAMSRIPR PNMDELTKVS DTSVSKEEVC  60
AAETGVRKVG RLSRSSTPGH GTSGNESDDA EVSIAHEESS SSNQNTSEAA PNSFNGRKRK  120
QMQKDKGKDF AFLQAKKETQ VRREKISERM KFLQDLVPGC SKVVHDICVL FFSDHIDCFA  180
KWIFHAAHLN RGLCLQAHGK AVMLDEIVNY VQSLQQQVEF LSMKLAVVNP WMEFNVEGIL  240
AKDMLQSQGS SPTMVFASDT STSYPQLHHP QQGLVQIGIE GHGILSHVWD NELQSVIQMG  300
FVQNNHTPLT SQGNTGPMPT THMKSDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131511e-145BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-38bHLH family protein